BME/BIO 210: Application and Analysis of (Biological) Microarrays

Spring Quarter, 2007

Reading List by Topic

Text: Microarray Gene Expression Data Analysis: A Beginner's Guide [ILLUSTRATED] (Paperback)
by
Helen Causton, John Quackenbush, Alvis Brazma


Note: All the articles with [On-line] links should be accessible from with the ".ucsc.edu" campus domain.

Introduction & Basic Array Design - April 9

Experimental Design - April 11

Journal Club - April 13

Spotted Array Design - April 16

Types of Experiments / Array Databases - April 18

Journal Club - April 20

Additional Data Acquisition & Basic Analysis Papers

GenePix 6.0 - Introduction Lab - April 23

Introduction to R & Bioconductor - April 25

Journal Club - April 27

Bioconductor Lab / Normalization Issues - April 30

Reproducibility of Arrays / Microarray Quality Control Project (MAQC) - May 2

Gene Expression Clustering - May 10 & 11

Advanced Analysis - Integrating Microarray Data with Genomics - May 16

Web Resources for Microarray Analysis and Databases - May 17


Evolution of Gene Expression - May 18

Additional Applications of DNA Array Technology

Addtional Advanced Analysis Methods

Other Kinds of Arrays


** Access information provided in class.


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