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BME 210 - Class Calendar

updated weekly
Date
Session
Topics
Assigned Reading
(see Reading List page for links)
Assignments Due
Sept 25, Thurs

Course Overview
Lecture 1

Course topics, introduction to microarrays
Basic types of DNA arrays: Spotted oligo/cDNA, Affymetrix
Oligos v. PCR products v. In situ oligo synthesis

Types of Array platforms


Sept 30,
Tues
Microarrays, cont.
Lecture 2
Lecture 2b
Types of Array Experiments
Array Databases
Making your own spotted arrays

Microarrays: Lockhart Nature review
2nd gen sequencing: Mardis review
3rd gen sequencing: Gupta review


Oct 2,
Thurs
Paper Discussion
Todd
Classic Yeast Microarray Papers
Spellman Yeast Cell Cycle paper,
Gasch Environmental Stress paper


Oct 7,
Tue
Lecture

Microarray Data Analysis Methods
Three reviews:
Ehrenreich general overview
Cordero data analysis
Golub & Sherlock clustering

Oct 9,
Thurs
Paper Discussion
Steve Benz



Oct 14,
Tues
Guest Lecture
Aaron Cozen
Respiration in Pyrobaculum
Using Genesis


Oct 16,
Thurs
Paper Discussion
Jacob Garringnes



Oct 21,
Tues
Lecture
Applications using Tiling Arrays
Annotating Genomes with Functional Genomic Data
ENCODE paper

Oct 23,
Thurs
Paper Discussion
David Greenberg



Oct 28,
Tues
Lecture
High-throughput Sequencing Applications:
Genomes, SNPs and Gene Expression


Oct 30,
Thurs
Paper Discussion
Herbert Lee



Nov 4,
Tues
Lecture


Pseudo grant topic &
specific aims due
Nov 6,
Thurs
Paper Discussion
Andy Nguyen



Nov 11,
Tues
Holiday
No Class



Nov 13,
Thurs
Paper Discussion
John Gaverick



Nov 18,
Tues
Lecture



Nov 20,
Thurs
Paper Discussion
Dent Earl



Nov 25,
Tues
Lecture


Psuedo-grant
Due
Nov 27,
Thurs
Thanksgiving
No Class



Dec 2,
Tues
Paper Discussion


Dec 4,
Thurs
Lecture



Dec 8,
Mon 8-11am
Grant Review Panel


Written grant reviews