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BME110: Computational Biology Tools
Problem Sets

Problem Set Topic Date Due Answer Keys
1 Part A, Part B
Sequence databases, simple sequence analysis January 23
Part A, Part B
2
Dynamic programming, sequence alignment January 30
3 Part A, Part B
BLAST, PSI-BLAST February 9
Part B
4
Multiple sequence alignments, HMMs, fold recognition February 18
5
Orthologs, paralogs, trees February 23
6
Protein structures March 1
7
Structure comparison, structure prediction March 8
7
8 (cancelled)
Genome analysis, RNA structure and genefinding March 15