>LWPCN32
ATGGCACCAGCTATAAAAGTGCTCTTTCTATGTACCCACAATGCCTGTCGTAGCATCCTTGCGGAAG
CCATCGGCCGAGATCTTCTGATTAAGTTGGAGGATGTGACCTCTGCTAAATGGCAGTTTGCGAGTGCAGGCAGTGCTCCTGCGGGAGTGGTTCATCCACAAACTTTATTGCAATTAGCTCATAGAGGCTA
TAGTACCGAGGGCCTCAGCAGTAAAAACTGGGATGTGATGGCTGATTTTACGCCCGATCTGGTGATTACTGTGTGTGATAGTGCCGCGGGAGAAACCTGCCCTCTATGGTTAGGCCACACACTCAAGTT
GCATTGGGGGTTACCGGATCCAACATCAACAGATCCCGCCGATATGGATGCACAGTTTTCCAGTGTCATTGGCACTCTTGAAAAACGTATAACAGCATTAATCTCCTTGCCGCTTTCGGCTGGTATTGAT
GCACAGAAGGTTTCTTTACAATCCATTGCGAGTCAGTTTCCACTTACGTAA
Translate into protein sequence (e.g. with an ExPASy tool)
BLAST the protein sequence against Swissprot (e.g. at NCBI); cut-off: E-value smaller than 0.1
Get all sequences that are found (not as easy as it sounds...)
Edit their names so they are more informative
Load into Jalview (use WebStart version + have the documentation open)
Add the query (protein) sequence
Align, e.g. using MUSCLE
We'll pick up here after the midterms, in a Part II to this Demo.
Make sure you can do this part yourself before the midterm!