Sequences for
In-class Exercises, April 22
>O16386_CAEEL/548-847
QLIM-----FITKSMNNY------HTEIKCLEQEF-DLLTQDIRFETAVKLAQQ------
-QNTRKNIIYKTNMKLGGLNYELRSGVFS----------------NSKRLIIGFETSQR-
---------GGLGDAPIAIGFAANMMS-HSQQFAGGYMFVKKSADNYGPVIP--------
----EILLTILKQAKANRPNDRPDELLIYFSGVS--EGQHALVNEYYANQVKAACGLFNE
SFR---------PHITLILASKVHNTRVYKSENGGG------------------------
VCNVEPGTVIDHTIVSPVLSEWYHAGSLARQGTSKLVKYSLIFNTKK----NEKLSVYE-
RLTNELCYEMQIVFHPTS--------LPIPLHIAGTYSERGSQMLA
>O02095_CAEEL/574-878
QLLF-----FVVKSRYNY------HQQIKALEQKY-DVLTQEIRAETAEKVFRQ------
-PQTRLNIINKTNMKLGGLNYAIGSEAFN----------------KPNRLIVGFVTSQR-
--------VGGNPDYPISVGFAANMLK-HHQKFAGGYVYVHRDRDVFGSIIK--------
-----DTLLAIFKTCTEQR-GRPDDILLYFNGVS--EGQFSMINEEFSARVKEACMAFQK
EGTP-----PFRPHITIIASSKAHNERLYKSDKGRI------------------------
-VNLEPGTVVDHTIVSNVYTEWYHASAVARQGTAKATKFTLIFTTKAGP-QAEPLWHLE-
QLTNDLCYDHQIVFHPVG--------LPVPLYIADRYSQRGAMVLA
>Q21495_CAEEL/52-336
GIVLPTPRIFFRDGQETS------------LNNQSFRNPTDFAQTGFFVDAKQQ------
---------------LGGLNYVVNSETWN----------------DSGLLLIGLSTAPY-
-------LNSYSSENVTTIGFVSNTMD-HPQKFAGGYKYVKSGSDVFGQVMP--------
----EILLNSLRSARKARK-IKPMNIVIYLCGMS--ESRFSIVKEEYVRNCHSVFKTLGE
KYS---------PQLTIIVGSKGHSTRLYARGERDQIS----------------------
--NLQPGTIVDSVIVSPDYNKFFHCGAVARQGTCKATKYTVLYPE-S-----PKMEWIQ-
RMTNDLCYMHEIVFHPVS--------LPAPLYLTAEMAERGTKNLA
>O62275_CAEEL/594-924
TFVF-----IITDDSITTL-----HQRYKMIEKDT-KMIVQDMKLSKALSVINAGK----
-RLTLENVINKTNVKLGGSNYVFVDAKK----------------QLDSHLIIGVGISAPP
AGTKYAMENKGVLN-PNVIGYAYNAQ--HNQEFSGDFVLNSASQDTLAPIED--------
-----IVMHSLNEYQKFHDGGLPRRVIVYRTGTS--EGNHGSIMAYEIPLARAAMRDFSP
DIQ-----------LVYIVVSKDHSFRFFKPDLASLASRPQATSSTASRHSAMPAAPKAW
DLNIAPGILVDSIVTNPACKQFFLNSHITLQGTAKTPLYTVLADDAK-----VSMTALE-
DITYKLCHLHQIVGLPTS--------LPTPLYVANEYAKRGRNLWN
>Q23415_CAEEL/40-350
KFAF-----VITDDSITHL-----HKKYKALEQKS-MMVIQDMKISKANSVVKDGK----
-RLTLENVINKTNMKLGGLNYTVSDAKKS---------------MTDEQLIIGVGVSAPP
AGTKYMMDNKGHLN-PQIIGFASNAV--ANHEFVGDFVLAPSGQDTMASIED--------
-----VLKSSIDLFEMNRN-TLPKRIIIYRSGAS--DGSHASILAYEIPLARATIQGYSK
DIN-----------LIYIIVTKEHSYRFFRDQLRSGG--------------------KAT
EMNIPPGIVLDSAVTNPACKQFFLNGHTTLQGTAKTPLYTILADDCN-----APMDRLE-
ELTYTLCHHHQIVALSTS--------IPTPLYVANEYAKRGRDLWS
>Q19645_CAEEL/674-996
PFVL-----FISDDVPNIHECLKFEERMSDIPTQHVLLKNVKKMRDNIEKKSQGGRR--A
YDLTLDNIVMKANIKCGGLNYTADIPRDLAC------------WNEVSTFVIGMDVAHP-
-----DRNAAREGN-PSTVGLSCNSAE-NPYSFIGDFLYTDPRREAIQDEIL--------
---RKFTDQSVRNFAEIRG--FPKKVIIFRDGVS--FGEETAALK-EVEIIEQTIKTAAK
SMGH----SDYAPKVLAIVVKKRHHTRFYAKGGHHG----------------------NM
PINPLPDTSVGGDIAEYGKRQIFIQAFRPVQGTAKVPSFLVIRDDEE-----VSDEHVA-
KMVCAVCSLHQLVNSPTS--------IPTPVYVAHELAKRGTGLYK
>Q21691_CAEEL/673-1001
TIVF-----GIIAEKRPDM-----HDILKYFEEKLGQQTIQISSETADKFMRDHGG----
-KQTIDNVIRKLNPKCGGTNFLIDVPESVGHRVVCNNSAEMRAKLYAKTQFIGFEMSHTG
ARTRFDIQKVMFDGDPTVVGVAYSLK--HSAQLGGFSYFQESRLHKLTNLQE--------
-----KMQICLNAYEQSSS-YLPETVVVYRVGSG--EGDYPQIVN-EVNEMKLAARKKKH
GYN---------PKFLVICTQRNSHIRVFPEHINERG--------------------KSM
EQNVKSGTCVDVPGASHGYEEFILCCQTPLIGTVKPTKYTIIVNDCR-----WSKNEIM-
NVTYHLAFAHQVSYAPPA--------IPNVSYAAQNLAKRGHNNYK
>YQ53_CAEEL/650-977
DILV-----GIAREKKPDV-----HDILKYFEESIGLQTIQLCQQTVDKMMGGQGG----
-RQTIDNVMRKFNLKCGGTNFFVEIPNAVRGKAVCSNNETLRKKLLEHVQFIGFEISHGA
SRTLFDRSRSQMDGEPSVVGVSYSLT--NSTQLGGFTYLQTQKEYKLQKLDE--------
-----FFPKCVRSYKEHSK-TLPTRIVIYRVGAG--EGNFNRVKE-EVEEMRRTFDKIQP
GYR---------PHLVVIIAQRASHARVFPSCISGN---------------------RAT
DQNIPSGTCVENVLTSYGYDEFILSSQTPLIGTVRPCKYTILVNDAK-----WSKNELM-
HLTYFRAFGHQVSYQPPS--------VPDVLYAAENLAKRGRNNYK
>O48771_ARATH/542-860
FILC-----ILPERKTSDI-----YGPWKKICLTEEGIHTQCICPIKISDQ---------
---YLTNVLLKINSKLGGINSLLGIEYSYN----------IPLINKIPTLILGMDVSHG-
--------PPGRADVPSVAAVVGSKCWPLISRYRAAVRTQSPRLEMIDSLFQPIENT--E
KGDNGIMNELFVEFYRTSRARKPKQIIIFRDGVS--ESQFEQVLKIEVDQIIKAYQRLGE
SDV---------PKFTVIVAQKNHHTKLFQAKGPEN------------------------
---VPAGTVVDTKIVHPTNYDFYMCAHAGKIGTSRPAHYHVLLDEIG-----FSPDDLQ-
NLIHSLSYKLLNSIFNVSSLLCVFVLSVAPVRYAHLAAAQVAQFTK
>Q9ZVD5_ARATH/577-885
FILC-----VLPDKKNSDL-----YGPWKKKNLTEFGIVTQCMAPTRQPNDQ--------
---YLTNLLLKINAKLGGLNSMLSVERTPA----------FTVISKVPTIILGMDVSHG-
--------SPGQSDVPSIAAVVSSREWPLISKYRASVRTQPSKAEMIESLVKKNG-----
TEDDGIIKELLVDFYTSSNKRKPEHIIIFRDGVS--ESQFNQVLNIELDQIIEACKLLDA
NWN---------PKFLLLVAQKNHHTKFFQPTSPEN------------------------
---VPPGTIIDNKICHPKNNDFYLCAHAGMIGTTRPTHYHVLYDEIG-----FSADELQ-
ELVHSLSYVYQRSTSAIS--------VVAPICYAHLAAAQLGTFMK
>AGO1_SCHPO/500-799
YLFF-----ILDKNSPEP------YGSIKRVCNTMLGVPSQCAISKHILQSKPQ------
---YCANLGMKINVKVGGINCSLIPKSNP--------------LGNVPTLILGGDVYHP-
---------GVGATGVSIASIVASVDL-NGCKYTAVSRSQPRHQEVIEGMKD--------
-----IVVYLLQGFRAMTK-QQPQRIIYFRDGTS--EGQFLSVINDELSQIKEACHSLSP
KYN---------PKILVCTTQKRHHARFFIKNKSDG----------------------DR
NGNPLPGTIIEKHVTHPYQYDFYLISHPSLQGVSVPVHYTVLHDEIQ-----MPPDQFQ-
TLCYNLCYVYARATSAVS--------LVPPVYYAHLVSNLARYQDV
>YO43_CAEEL/660-966
CIIV-----VLQSKNSDI------YMTVKEQSDIVHGIMSQCVLMKNVSRPTPA------
---TCANIVLKLNMKMGGINSRIVADKITN-----------KYLVDQPTMVVGIDVTHP-
------TQAEMRMNMPSVAAIVANVDL-LPQSYGANVKVQKKCRESVVYLLD--------
-----AIRERIITFYRHTK-QKPARIIVYRDGVS--EGQFSEVLREEIQSIRTACLAIAE
DFR---------PPITYIVVQKRHHARIFCKYQNDM---------------------VGK
AKNVPPGTTVDTGIVSPEGFDFYLCSHYGVQGTSRPARYHVLLDECK-----FTADEIQ-
SITYGMCHTYGRCTRSVS--------IPTPVYYADLVATRARCHVK
>PINH_ARATH/625-946
LLLA-----ILPDNNGSL------YGDLKRICETELGLISQCCLTKHVFKISKQ------
---YLANVSLKINVKMGGRNTVLVDAISCR----------IPLVSDIPTIIFGADVTHP-
-------ENGEESS-PSIAAVVASQDWPEVTKYAGLVCAQAHRQELIQDLYKTWQDPVRG
TVSGGMIRDLLISFRKATG-QKPLRIIFYRDGVS--EGQFYQVLLYELDAIRKACASLEP
NYQ---------PPVTFIVVQKRHHTRLFANNHRDKNS-------------------TDR
SGNILPGTVVDTKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENN-----FTADGIQ-
SLTNNLCYTYARCTRSVS--------IVPPAYYAHLAAFRARFYLE
>O16720_CAEEL/566-867
LIVV-----VLP-GKTPI------YAEVKRVGDTVLGIATQCVQAKNAIRTTPQ------
---TLSNLCLKMNVKLGGVNSILLPNVRPR-------------IFNEPVIFLGCDITHP-
--------AAGDTRKPSIAAVVGSMDA-HPSRYAATVRVQQHRQEIITDLTY--------
-----MVRELLVQFYRNTR-FKPARIVVYRDGVS--EGQLFNVLQYELRAIREACVMLES
GYQ---------PGITFIAVQKRHHTRLFAADKADQ---------------------VGK
AFNIPPGTTVDVGITHPTEFDFFLCSHAGIQGTSRPSHYHVLWDDND-----LTADELQ-
QLTYQMCHTYVRCTRSVS--------IPAPAYYAHLVAFRARYHLV
>O61931_CAEEL/806-1081
---C-----ALTRLMVEKV--------LGKVGTTH----------RKLERGGAH------
------------------KTWTIFTDP------------------AKPTLVLGIDVSHP-
--STRDRETGNVLQKMSAATVVGNIDL-DVTEFRASSRIQDTGVECLIDFSK--------
-----EIDERIGEFIDHTG-KRPAHIVVYRDGLS--EGDFQKYLFEERVCIEERCLKIDT
SFQ---------PSITYIVVTKRHHTQFFLEDPSQGY--------------------ESQ
GYNVLPGTLIEDAVTTNKYYDFFLSTQIGNEGCFRPTHYYVLHDTWT-----GKPDSFWP
TVTHALTYNFCRSTTTVA--------LPAPVLYAHLAAKRAKETLD
>PIWI_DROME/538-829
LILC-----LVPNDNAER------YSSIKKRGYVDRAVPTQVVTLKTTKNR---------
------SLMSIATKIAIQLNCKLGYTPW------------MIELPLSGLMTIGFDIAKS-
----------TRDRKRAYGALIASMDLQQNSTYFSTVTECSAFDVLANTLWP--------
-----MIAKALRQYQHEHR-KLPSRIVFYRDGVS--SGSLKQLFEFEVKDIIEKLKTEYA
RVQ------LSPPQLAYIVVTRSMNTRFFLNGQ---------------------------
--NPPPGTIVDDVITLPERYDFYLVSQQVRQGTVSPTSYNVLYSSMG-----LSPEKMQ-
KLTYKMCHLYYNWSGTTR--------VPAVCQYAKKLATLVGTNLH
>O76922_DROME/555-852
IVMV-----VMRSPNEEK------YSCIKKRTCVDRPVPSQVVTLKVIAPRQQK------
----PTGLMSIATKVVIQMNAKLMGAPW------------QVVIPLHGLMTVGFDVCHS-
----------PKNKNKSYGAFVATMDQKESFRYFSTVNEHIKGQELSEQMSV--------
-----NMACALRSYQEQHR-SLPERILFFRDGVG--DGQLYQVVNSEVNTLKDRLDEIYK
SAGK-----QEGCRMTFIIVSKRINSRYFTGHR---------------------------
--NPVPGTVVDDVITLPERYDFFLVSQAVRIGTVSPTSYNVISDNMG-----LNADKLQ-
MLSYKMTHMYYNYSGTIR--------VPAVCHYAHKLAFLVAESIN
>Q17567_CAEEL/397-708
MLVV-----MLADDNKTR------YDSLKKYLCVECPIPNQCVNLRTLAGKSKDGGENKN
LGSIVLKIVLQMICKTGGALWKVN-------------------IPLKSTMIVGYDLYHD-
----------STLKGKTVGACVSTTSN-DFTQFYSQTRPHENPTQLGNNLTH--------
-----FVRKSLKQYYDNNDKTLPSRLILYRDGAG--DGQIPYIKNTEVKLVRDACDAVTD
KAAELSNKVQEKIKLAFIIVTKRVNMRILKQGSSSKS-----------------------
AINPQPGTVVDTTVTRPERMDFYLVPQFVNQGTVTPVSYNIIHDDTG-----LGPDKHQ-
QLAFKLCHLYYNWQGTVR--------VPAPCQYAHKLAFLTAQSLH
>PIWL1_HUMAN/555-847
IVVC-----LLSSNRKDK------YDAIKKYLCTDCPTPSQCVVARTLGKQQTV------
-MAIATKIALQMNCKMGGELWRVD-------------------IPLKLVMIVGIDCYHD-
----------MTAGRRSIAGFVASINE-GMTRWFSRCIFQDRGQELVDGLKV--------
-----CLQAALRAWNSCNE-YMPSRIIVYRDGVG--DGQLKTLVNYEVPQFLDCLKSIGR
GYN---------PRLTVIVVKKRVNTRFFAQS-GGR------------------------
LQNPLPGTVIDVEVTRPEWYDFFIVSQAVRSGSVSPTHYNVIYDNSG-----LKPDHIQ-
RLTYKLCHIYYNWPGVIR--------VPAPCQYAHKLAFLVGQSIH
>Y1321_METJA/426-699
CFAL-----IIGKEKYKDND----YYEILKKQLFDLKIISQNILWENWRKDDKG------
---YMTNNLLIQIMGKLGIKYFILDSK------------------TPYDYIMGLDTGLG-
-----------IFGNHRVGGCTVVYDS-EGKIRRIQPIETPAPGERLHLP----------
-----YVIEYLENKANID--MENKNILFLRDG---------FIQNSERNDLKEISKELNS
N-------------IEVISIRKNNKYKVFTSDYRIG------------------------
SVFGNDGIFLPHKTPFGSNPVKLSTWLRFNCGNEEG--LKINES---------IMQLLY-
DLTKMNYSALYGEGRYLR--------IPAPIHYADKFVKALGKNWK
>O67434_AQUAE/419-694
LVIV-----FLEEYPKVDPYKSFLLYDFVKRELLKKMIPSQVILNRTLKNENLK------
--FVLLNVAEQVLAKTGNIPYKLK-EIE-----------------GKVDAFVGIDISRIT
----------RDGKTVNAVAFTKIFNS-KGELVRYYLTSYPAFGEKLTEK----------
-----AIGDVFSLLEKLGF-KKGSKIVVHRDG---------RLYRDEVAAFKK----YGE
LYG---------YSLELLEIIKRNNPRFFSNEKFIK------------------------
---GYFYKLSEDSVILATYNQVYEG----THQPIK---VRKVYGE-------LPVEVLC-
SQILSLTLMNYSSFQPIK--------LPATVHYSDKITKLMLRGIE
>O28951_ARCFU/110-406
GIML-----VLPEYNTPL------YYKLKS--YLINSIPSQFMRYDILSNRNLT------
--FYVDNLLVQFVSKLGGKPWILNVDPE-----------------KGSDIIIGTGATRI-
----------DNVNLFCFAMVFKKD----GTMLWNEISPIVTSSEYLTYLKS--------
-----TIKKVVYGFKKSNPDWDVEKLTLHVSGKRPKMKDGETKILKETVEELKKQEMVSR
DVK-----------YAILHLNETH-PFWVMGDPNNRFH----------------------
PYEGTKVKLSSKRYLLTLLQPYLKRNGLEMVTPIKPLSVEIVSDNWTSEEYYHNVHEIL-
DEIYYLSKMNWRGFRSRN--------LPVTVNYPKLVAGIIANVNR